A B C D E F G H I J K L M N O P Q R S T U V W X Y

U

ui - Variable in class net.sourceforge.olduvai.treejuxtaposer.TreeJuxtaposer

Object for controlling user interface functions directed from the top menu (FILE, HELP, etc), to separate the menu functionality handling (string names, setup, etc) from the application.

UI - Class in net.sourceforge.olduvai.treejuxtaposer

User interface class that externalizes most of the menu setup for the top menu bar, and the main implementation of the dialog to add new trees.

UI(TreeJuxtaposer, String) - Constructor for class net.sourceforge.olduvai.treejuxtaposer.UI

Initializes the drawing surface and menu bar on the main frame.

uncoloredNode - Variable in class net.sourceforge.olduvai.treejuxtaposer.drawer.AccordionTreeDrawer

Index for uncolored node in AccordionTreeDrawer.getLeftMostNodes(TreeNode, TreeNode).

undraw() - Method in class net.sourceforge.olduvai.accordiondrawer.InteractionBox

Similar to InteractionBox.draw(Color, float, float), but only draw the rubber band with InteractionBox.drawRubberband() and the same set parameters, to undraw the previous interaction box.

uniformSplits - Variable in class net.sourceforge.olduvai.accordiondrawer.AccordionDrawer

Flags to set initial distribution of split lines (AccordionDrawer.X, AccordionDrawer.Y).

unmarkAllGroups() - Method in class net.sourceforge.olduvai.treejuxtaposer.StateFrame

Clear all user marked groups, and LCA mark checkbox.

unmarkGroup(int) - Method in class net.sourceforge.olduvai.treejuxtaposer.TreeJuxtaposer

Remove LCA marked objects from the given group, then clear the contents of the group, which will force the previously marked objects to not be marked by that group's color.

updateBoundLeftEchelon(SplitLine) - Method in class net.sourceforge.olduvai.accordiondrawer.SplitAxis

Repair left subtree following a delete

updateBoundRightEchelon(SplitLine) - Method in class net.sourceforge.olduvai.accordiondrawer.SplitAxis

Repair right subtree following a delete

updateDrag(int[]) - Method in class net.sourceforge.olduvai.accordiondrawer.InteractionBox

Updates InteractionBox.oldDragEnd with the previous value of InteractionBox.dragEnd, and InteractionBox.dragEnd with the new value passed in.

updateEchelonBounds(SplitLine) - Method in class net.sourceforge.olduvai.accordiondrawer.SplitAxis

Repairs tree structure around the given split line following a delete operation.

updateMinLineX(ArrayList, StaticSplitLine) - Method in class net.sourceforge.olduvai.treejuxtaposer.drawer.AccordionTreeDrawer

Helper function for AccordionTreeDrawer.buildCells(JProgressBar).

updateSubtreeSize(SplitLine) - Method in class net.sourceforge.olduvai.accordiondrawer.SplitAxis

Recursively update the size of subtrees under the given current split line.

updateTitle() - Method in class net.sourceforge.olduvai.treejuxtaposer.TreeJuxtaposer

Update the title bar for the application.

uSum - Variable in class net.sourceforge.olduvai.treejuxtaposer.Tree2Tree.TmpD

utreeID - Static variable in class net.sourceforge.olduvai.treejuxtaposer.TreeParser

Tree ID (same or similar to TreeParser.treeID?).