A B C D E F G H I J K L M N O P Q R S T U V W X Y

R

RangeInTree - Class in net.sourceforge.olduvai.treejuxtaposer.drawer

A class representing a range (ordered pair (min,max)) of TreeNode indices in a Tree.

RangeInTree(int, int, AccordionTreeDrawer) - Constructor for class net.sourceforge.olduvai.treejuxtaposer.drawer.RangeInTree

Basic constructor.

rangeLength() - Method in class net.sourceforge.olduvai.accordiondrawer.DrawableRange

Range length accessor.

RangeList - Class in net.sourceforge.olduvai.treejuxtaposer.drawer

A class representing a list of RangeInTrees.

RangeList(int, int) - Constructor for class net.sourceforge.olduvai.treejuxtaposer.drawer.RangeList

Constuctor for a range list, for storing details about marked groups of nodes.

ranges - Variable in class net.sourceforge.olduvai.accordiondrawer.AbstractRangeList

Resizeable Set of RangeInTree objects.

RECT_CREATE - Static variable in class net.sourceforge.olduvai.treejuxtaposer.AccordionTreeDrawerFinal

ActionMode: Mouse drag to create an interaction box

RECT_FREEMOVE - Static variable in class net.sourceforge.olduvai.treejuxtaposer.AccordionTreeDrawerFinal

ActionMode: Mouse movement with active interaction box (no drag)

RECT_FREEMOVEAGAIN - Static variable in class net.sourceforge.olduvai.treejuxtaposer.AccordionTreeDrawerFinal

ActionMode: Mouse movement after dragging the active interaction box (no current drag)

RECT_RESHAPE - Static variable in class net.sourceforge.olduvai.treejuxtaposer.AccordionTreeDrawerFinal

ActionMode: Mouse dragging movement with active interaction box

recursiveSearch(String) - Method in class net.sourceforge.olduvai.treejuxtaposer.IncrementalSearch

Search hashtable (IncrementalSearch.prefix) for the given text.

RED - Static variable in class net.sourceforge.olduvai.accordiondrawer.SplitAxis

Value for red nodes in CRT implementation of red-black trees.

redoStructuralDiffs() - Method in class net.sourceforge.olduvai.treejuxtaposer.TreeJuxtaposer

Complete do-over of structural diffs with all pairs of all trees.

reduceNodeListToCutoff(ArrayList, int) - Method in class net.sourceforge.olduvai.treejuxtaposer.Tree2Tree

Return an ArrayList of a reduced number of elements from ArrayList based on the number of leaves; bigger subtrees are kept, ties broken by taking any subtree with maximum number of leaves not already in forest.

relativeValue - Variable in class net.sourceforge.olduvai.accordiondrawer.SplitLine

Relative value, between 0 and 1, between SplitLine.opBound and SplitLine.parent, the bounds for this split line.

remove() - Method in class net.sourceforge.olduvai.accordiondrawer.SplitAxis.AxisIterator

Stub function.

removeAction() - Method in class net.sourceforge.olduvai.treejuxtaposer.UI

Triggers a new tree removal panel TreeRemovalPanel.

removeNodeFromForest(TreeNode, ArrayList, Hashtable) - Method in class net.sourceforge.olduvai.treejuxtaposer.Tree2Tree

Removes the node from the hashtable, indexed by its key (as an Integer).

REMOVEOPT - Static variable in class net.sourceforge.olduvai.treejuxtaposer.UI

Index for File->Remove option.

removeRange(int, int, AccordionTreeDrawer) - Method in class net.sourceforge.olduvai.treejuxtaposer.drawer.RangeList

Find and remove a given range.

removeTree(Tree) - Method in class net.sourceforge.olduvai.treejuxtaposer.TreePairs

Remove a tree from the list of trees.

renameNode - Variable in class net.sourceforge.olduvai.treejuxtaposer.TreeWriter

Node that is being renamed.

requestRedraw() - Method in class net.sourceforge.olduvai.accordiondrawer.AccordionDrawer

Redraw immediately, do not continue filling in details.

requestRedrawAll() - Method in class net.sourceforge.olduvai.treejuxtaposer.TreeJuxtaposer

Initiate a redraw in all drawer objects by calling AccordionDrawer.requestRedraw().

reset() - Method in class net.sourceforge.olduvai.accordiondrawer.AccordionDrawer

Resets the canvas to a state with a uniform grid, ends transitions, then redraws.

reset() - Method in class net.sourceforge.olduvai.treejuxtaposer.TreeJuxtaposer

Reset iterator: resets all drawers.

resetButton - Variable in class net.sourceforge.olduvai.treejuxtaposer.IncrementalSearch

Reset button

resetButton - Variable in class net.sourceforge.olduvai.treejuxtaposer.StateFrame

Reset button for unmarking previously marked user groups.

resetGridUniform() - Method in class net.sourceforge.olduvai.accordiondrawer.AccordionDrawer

Resets the grid to a uniform state.

resetHighlightPlane() - Method in class net.sourceforge.olduvai.accordiondrawer.AccordionDrawer

Sets the highlight plane back to its default value (-0.3f = magic number?)

resetObjectPlane() - Method in class net.sourceforge.olduvai.accordiondrawer.AccordionDrawer

Sets the object plane back to its default value (-0.5f = magic number?)

resetSearch() - Method in class net.sourceforge.olduvai.treejuxtaposer.IncrementalSearch

Reset the search results to empty, redraws in all drawers.

resetSplitValues() - Method in class net.sourceforge.olduvai.accordiondrawer.AccordionDrawer

Reset split lines to application-specific values.

resetSplitValues() - Method in class net.sourceforge.olduvai.accordiondrawer.SplitAxis

Wrapper to call resetSplitValuesRecurse() Must call computePlaceThisFrame before drawing anything after a reset.

resetSplitValues() - Method in class net.sourceforge.olduvai.treejuxtaposer.drawer.AccordionTreeDrawer

Stub function.

resetSplitValuesRecurse(SplitLine) - Method in class net.sourceforge.olduvai.accordiondrawer.SplitAxis

Recursively reset a subtree of split line values Previously n log n operation.

reshape(GLAutoDrawable, int, int, int, int) - Method in class net.sourceforge.olduvai.accordiondrawer.AccordionDrawer

Overloaded JOGL function for reshaping the canvas object, given position and new dimensions.

reshaperectangle(InteractionBox, boolean) - Method in class net.sourceforge.olduvai.treejuxtaposer.AccordionTreeDrawerFinal

Box stretching function used by AccordionTreeDrawerFinal.mouseDragged(MouseEvent).

resizeForest(AbstractRangeList, int, Hashtable, double) - Method in class net.sourceforge.olduvai.accordiondrawer.SplitAxis

Resize the group by the inflation increment, in the given number of steps, and add the transitions to the hashtable for successive redraws.

resizeGroup(RangeList, int, boolean, AccordionTreeDrawer) - Method in class net.sourceforge.olduvai.treejuxtaposer.TreeJuxtaposer

Resize the group in the given drawer.

resizeGroup(RangeList, int, boolean) - Method in class net.sourceforge.olduvai.treejuxtaposer.TreeJuxtaposer

Grow a marked group of objects in all drawers.

resizeRectOthers(TreeNode, double[], int, AccordionTreeDrawer) - Method in class net.sourceforge.olduvai.treejuxtaposer.TreeJuxtaposer

Linked navigation function to iterate changes over all drawers.

resolutionLabel - Static variable in class net.sourceforge.olduvai.treejuxtaposer.StateFrame

Label for node StateFrame.N_RES and subtree StateFrame.S_RES marking.

resolutionMode - Variable in class net.sourceforge.olduvai.treejuxtaposer.StateFrame

Resolution mode, for node StateFrame.N_RES or subtree StateFrame.S_RES marking modes.

resolutionPanel - Variable in class net.sourceforge.olduvai.treejuxtaposer.StateFrame

Panel for marking resolution.

resolutionTitle - Static variable in class net.sourceforge.olduvai.treejuxtaposer.StateFrame

Mark resolution (node or subtree marking) label.

results - Variable in class net.sourceforge.olduvai.treejuxtaposer.IncrementalSearch

Text that is put into the results pane IncrementalSearch.resultsPane.

resultsPane - Variable in class net.sourceforge.olduvai.treejuxtaposer.IncrementalSearch

Pane for picking results that can be scrolled.

returnObject - Static variable in class net.sourceforge.olduvai.treejuxtaposer.drawer.RangeList

Accessor flag for comparator in RangeInTree.

returnThreshold - Static variable in class net.sourceforge.olduvai.treejuxtaposer.IncrementalSearch

Highlight search results found if under (or equal to) this threshold

returnVector - Variable in class net.sourceforge.olduvai.treejuxtaposer.TreeParser

For returning results inside action listeners.

RIGHT - Variable in class net.sourceforge.olduvai.accordiondrawer.SplitAxis

array index for right bounds

RIGHT_MASK - Static variable in class net.sourceforge.olduvai.treejuxtaposer.SettingsFrame

Mask to OR by to access right side labels for fonts.

rightAlignFind(TreeNode, TreeNode, int, boolean) - Method in class net.sourceforge.olduvai.treejuxtaposer.AccordionTreeDrawerFinal

Find the right aligned cell that is below (above) the original node, using the parent node as reference.

rightChild - Variable in class net.sourceforge.olduvai.accordiondrawer.SplitLine

Right child of this split line, null if the child is null (possible leaf is left is also null).

rightmostLeaf - Variable in class net.sourceforge.olduvai.treejuxtaposer.drawer.TreeNode

Rightmost (maximum) leaf node under this internal node (or this node for leaves).

rightOf(SplitLine) - Static method in class net.sourceforge.olduvai.accordiondrawer.SplitAxis

Gets the right child of a given split line.

rightPanel - Variable in class net.sourceforge.olduvai.treejuxtaposer.SettingsFrame

Objects on the right side of the GUI.

root - Variable in class net.sourceforge.olduvai.accordiondrawer.SplitAxis

The root split line for the represented treemap object.

root - Variable in class net.sourceforge.olduvai.treejuxtaposer.drawer.Tree

Root node of this tree

rootNode - Variable in class net.sourceforge.olduvai.treejuxtaposer.drawer.AccordionTreeDrawer

Root of the AccordionTreeDrawer.tree.

rootNode - Variable in class net.sourceforge.olduvai.treejuxtaposer.TreeParser

Root node of the tree being parsed.

rotateLeft(SplitLine) - Method in class net.sourceforge.olduvai.accordiondrawer.SplitAxis

Based on CLR Do a left rotate at the given node.

rotateRight(SplitLine) - Method in class net.sourceforge.olduvai.accordiondrawer.SplitAxis

Based on CLR Do a right rotate at the given node.

rowObject - Variable in class net.sourceforge.olduvai.accordiondrawer.SplitLine

An object that stores a 'row' of data.

rubberbandColor - Variable in class net.sourceforge.olduvai.accordiondrawer.AccordionDrawer

XOR color mask for rubberband interaction box.