Uses of Class
AccordionTreeDrawer.Tree

Packages that use Tree

AccordionTreeDrawer
Parser
TreeJuxtaposer

Uses of Tree in AccordionTreeDrawer

Fields in AccordionTreeDrawer declared as Tree

Tree	AccordionTreeDrawer.tree

Methods in AccordionTreeDrawer that return Tree

Tree	AccordionTreeDrawer.getTree()

Methods in AccordionTreeDrawer with parameters of type Tree

int	AccordionTreeDrawer.computeBottomSizeOne(Tree tree) We now create a certain number of empty (NOT null) cells between adjacent leaves for better separation of subtrees.
void	AccordionTreeDrawer.resizeForest(Tree inTree, java.util.ArrayList _forestRoots, boolean grow, int numSteps, boolean horizontal, boolean vertical) Resize (grow=true ==> expand, shrink otherwise) the subtree rooted at node contained in Geoms.
void	AccordionTreeDrawer.resizeSubtree(Tree thisTree, TreeNode tn, boolean grow, int numSteps, boolean horizontal, boolean vertical)

Constructors in AccordionTreeDrawer with parameters of type Tree

Tree(Tree t)

AccordionTreeDrawer(Tree t, int w, int h)

Uses of Tree in Parser

Methods in Parser with parameters of type Tree

void	Newick.parseTree(Tree t) function parseTree initiates field tree, call function Input to parse the input.

Uses of Tree in TreeJuxtaposer

Methods in TreeJuxtaposer that return Tree

Tree	TreeJuxtaposer.getTreeByName(java.lang.String name) Fetch a tree by its name.

Methods in TreeJuxtaposer with parameters of type Tree

int	TreePairs.isRangeInRange(Tree treeA, int AMin, int AMax, Tree treeB, int BMin, int BMax) given a node range in one tree, say whether there's an overlap with the node range in the other tree.
int	TreePairs.isRangeInRange(Tree treeA, int AMin, int AMax, Tree treeB, int BMin, int BMax) given a node range in one tree, say whether there's an overlap with the node range in the other tree.
void	TreeJuxtaposer.addTree(Tree newTree) Adds a new tree to "trees", performs all the pairwise tree comparisons and stores results.

Constructors in TreeJuxtaposer with parameters of type Tree

RangeTree(Tree treeA, Tree treeB, TreeJuxtaposer.Tree2Tree t2t)
constructor: builds a 2D RangeTree data structure.

RangeTree(Tree treeA, Tree treeB, TreeJuxtaposer.Tree2Tree t2t)
constructor: builds a 2D RangeTree data structure.