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| Class Summary | |
| AccordionTreeDrawerFinal | A class that fleshes out the abstract methods left in AccordionTreeDrawer. |
| ButterflyFrame | |
| DebugFrame | |
| Help | |
| IncrementalSearch | |
| NewickFilter | |
| NexusFilter | |
| NexusTreeLoader | |
| Point | A class representing a point in a plane. |
| RangeNode | A class representing a node in a RangeTree. |
| RangeTree | A class representing a two-dimensional orthogonal range tree. |
| SettingsFrame | |
| StateFrame | |
| Tree2Tree | Tree2Tree does the precomputation for each pair of trees. |
| TreeJuxtaposer | A class representing a tree juxtaposer. |
| TreePairs | TreePairs store all the pairwise data structures needed for structural comparison and visulization. |
| TreeRemovalPanel | |
| UI | |
| Utils | |
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