Uses of Interface
net.sourceforge.olduvai.accordiondrawer.CellGeom

Packages that use CellGeom

net.sourceforge.olduvai.accordiondrawer
net.sourceforge.olduvai.treejuxtaposer
net.sourceforge.olduvai.treejuxtaposer.drawer

Uses of CellGeom in net.sourceforge.olduvai.accordiondrawer

Fields in net.sourceforge.olduvai.accordiondrawer declared as CellGeom

private CellGeom	LabelBox.attachedObject Attached object for this label, if applicable.
protected CellGeom	AccordionDrawer.flashGeom A geometry that represents the currently drawn flash object (single object that is selected by a mouse-over; could be a composite/aggregate object, but it is drawn as a single entity).
protected CellGeom	AccordionDrawer.flashGeomOld The geometry for the previously selected flash object (see AccordionDrawer.flashGeom, AccordionDrawer.flashBox, and AccordionDrawer.flashBoxOld).
CellGeom	InteractionBox.item The item that is contained in the interaction box, if applicable

Methods in net.sourceforge.olduvai.accordiondrawer that return CellGeom

CellGeom	LabelBox.getAttachedObject() Get the object that is attached to this label box.
CellGeom	StaticSplitAxis.getStaticSplitLineObject(int pos) Return the object at the given position, as a proper cell geom (TreeNode in TJ)
abstract CellGeom	AccordionDrawer.pickGeom(int x, int y) Get the geometric object found at pixel coordinate (x,y)

Methods in net.sourceforge.olduvai.accordiondrawer with parameters of type CellGeom

abstract void	AccordionDrawer.drawGeom(CellGeom cg, DrawableRange r) Draws a single geom.
abstract java.util.ArrayList	AccordionDrawer.getColorsForCellGeom(CellGeom c) (TJ only) Get the list of possible colors for the given cell geometry
void	AccordionDrawer.setFlash(CellGeom cg, java.awt.Color col, int x, int y, boolean doBox) Sets the flash state and calls the flash drawing function, AccordionDrawer.doFlash().

Constructors in net.sourceforge.olduvai.accordiondrawer with parameters of type CellGeom

InteractionBox(SplitLine[] minSplit, SplitLine[] maxSplit, CellGeom item, AccordionDrawer d)
Creates an interaction box with the given split lines, data object, and drawer

LabelBox(int[] bottomLeft, int[] topRight, int[] bottomLeftBG, int computedFrame, java.lang.String name, CellGeom attachedObject, int fontHeight)
Label box constructor.

Uses of CellGeom in net.sourceforge.olduvai.treejuxtaposer

Fields in net.sourceforge.olduvai.treejuxtaposer declared as CellGeom

private CellGeom

TreeJuxtaposer.flashGeomOld "Old" geometry from a previous flash action, which is stored in its original state in the pixel buffer.

Methods in net.sourceforge.olduvai.treejuxtaposer with parameters of type CellGeom

protected void	TreeJuxtaposer.doFlashGeom(CellGeom flashGeom, int group, AccordionTreeDrawerFinal thisTree, int x, int y) Callback function from cursor movement highlighting.
java.util.ArrayList	AccordionTreeDrawerFinal.getColorsForCellGeom(CellGeom c) Wrapper for TreeJuxtaposer call to TreeJuxtaposer.getColorsForRange(int, int, AccordionTreeDrawer).
protected void	TreeJuxtaposer.setFocus(CellGeom g, AccordionTreeDrawer atd) Set the focus, for each drawer, to the given tree node in the given drawer.

Uses of CellGeom in net.sourceforge.olduvai.treejuxtaposer.drawer

Classes in net.sourceforge.olduvai.treejuxtaposer.drawer that implement CellGeom

class

TreeNode A class representing a node of a (phylognenetic) tree.

Methods in net.sourceforge.olduvai.treejuxtaposer.drawer that return CellGeom

CellGeom

AccordionTreeDrawer.pickGeom(int x, int y) Pick the object at the given X/Y pixel location.

Methods in net.sourceforge.olduvai.treejuxtaposer.drawer with parameters of type CellGeom

void	AccordionTreeDrawer.drawGeom(CellGeom cg, DrawableRange r) Draws a geometric object (treenode here) within a containing cell A node is drawn when it's larger than some ratio of block value, as determined from the drawRange function, or when a node is marked individually, such as mouse over highlighting or single node marking
InteractionBox	AccordionTreeDrawer.makeBox(CellGeom cg) Create box enclosing the subtree beneath input node/edge.